Exploring antibiotic resistance genes and metal resistance genes in plasmid metagenomes from wastewater treatment plants
Identifieur interne : 000088 ( Main/Exploration ); précédent : 000087; suivant : 000089Exploring antibiotic resistance genes and metal resistance genes in plasmid metagenomes from wastewater treatment plants
Auteurs : An-Dong Li ; Li-Guan Li ; Tong ZhangSource :
- Frontiers in Microbiology [ 1664-302X ] ; 2015.
Abstract
Plasmids operate as independent genetic elements in microorganism communities. Through horizontal gene transfer (HGT), they can provide their host microorganisms with important functions such as antibiotic resistance and heavy metal resistance. In this study, six metagenomic libraries were constructed with plasmid DNA extracted from influent, activated sludge (AS) and digested sludge (DS) of two wastewater treatment plants (WWTPs). Compared with the metagenomes of the total DNA extracted from the same sectors of the wastewater treatment plant, the plasmid metagenomes had significantly higher annotation rates, indicating that the functional genes on plasmids are commonly shared by those studied microorganisms. Meanwhile, the plasmid metagenomes also encoded many more genes related to defense mechanisms, including ARGs. Searching against an antibiotic resistance genes (ARGs) database and a metal resistance genes (MRGs) database revealed a broad-spectrum of antibiotic (323 out of a total 618 subtypes) and MRGs (23 out of a total 23 types) on these plasmid metagenomes. The influent plasmid metagenomes contained many more resistance genes (both ARGs and MRGs) than the AS and the DS metagenomes. Sixteen novel plasmids with a complete circular structure that carried these resistance genes were assembled from the plasmid metagenomes. The results of this study demonstrated that the plasmids in WWTPs could be important reservoirs for resistance genes, and may play a significant role in the horizontal transfer of these genes.
Url:
DOI: 10.3389/fmicb.2015.01025
PubMed: 26441947
PubMed Central: 4585309
Affiliations:
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Exploring antibiotic resistance genes and metal resistance genes in plasmid metagenomes from wastewater treatment plants</title><author><name sortKey="Li, An Dong" sort="Li, An Dong" uniqKey="Li A" first="An-Dong" last="Li">An-Dong Li</name></author><author><name sortKey="Li, Li Guan" sort="Li, Li Guan" uniqKey="Li L" first="Li-Guan" last="Li">Li-Guan Li</name></author><author><name sortKey="Zhang, Tong" sort="Zhang, Tong" uniqKey="Zhang T" first="Tong" last="Zhang">Tong Zhang</name></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">26441947</idno><idno type="pmc">4585309</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4585309</idno><idno type="RBID">PMC:4585309</idno><idno type="doi">10.3389/fmicb.2015.01025</idno><date when="2015">2015</date><idno type="wicri:Area/Pmc/Corpus">000013</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">000013</idno><idno type="wicri:Area/Pmc/Curation">000013</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">000013</idno><idno type="wicri:Area/Pmc/Checkpoint">000081</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">000081</idno><idno type="wicri:Area/Ncbi/Merge">000408</idno><idno type="wicri:Area/Ncbi/Curation">000408</idno><idno type="wicri:Area/Ncbi/Checkpoint">000408</idno><idno type="wicri:Area/Main/Merge">000088</idno><idno type="wicri:Area/Main/Curation">000088</idno><idno type="wicri:Area/Main/Exploration">000088</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Exploring antibiotic resistance genes and metal resistance genes in plasmid metagenomes from wastewater treatment plants</title><author><name sortKey="Li, An Dong" sort="Li, An Dong" uniqKey="Li A" first="An-Dong" last="Li">An-Dong Li</name></author><author><name sortKey="Li, Li Guan" sort="Li, Li Guan" uniqKey="Li L" first="Li-Guan" last="Li">Li-Guan Li</name></author><author><name sortKey="Zhang, Tong" sort="Zhang, Tong" uniqKey="Zhang T" first="Tong" last="Zhang">Tong Zhang</name></author></analytic><series><title level="j">Frontiers in Microbiology</title><idno type="eISSN">1664-302X</idno><imprint><date when="2015">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Plasmids operate as independent genetic elements in microorganism communities. Through horizontal gene transfer (HGT), they can provide their host microorganisms with important functions such as antibiotic resistance and heavy metal resistance. In this study, six metagenomic libraries were constructed with plasmid DNA extracted from influent, activated sludge (AS) and digested sludge (DS) of two wastewater treatment plants (WWTPs). Compared with the metagenomes of the total DNA extracted from the same sectors of the wastewater treatment plant, the plasmid metagenomes had significantly higher annotation rates, indicating that the functional genes on plasmids are commonly shared by those studied microorganisms. Meanwhile, the plasmid metagenomes also encoded many more genes related to defense mechanisms, including ARGs. Searching against an antibiotic resistance genes (ARGs) database and a metal resistance genes (MRGs) database revealed a broad-spectrum of antibiotic (323 out of a total 618 subtypes) and MRGs (23 out of a total 23 types) on these plasmid metagenomes. The influent plasmid metagenomes contained many more resistance genes (both ARGs and MRGs) than the AS and the DS metagenomes. Sixteen novel plasmids with a complete circular structure that carried these resistance genes were assembled from the plasmid metagenomes. The results of this study demonstrated that the plasmids in WWTPs could be important reservoirs for resistance genes, and may play a significant role in the horizontal transfer of these genes.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Alvarez, M" uniqKey="Alvarez M">M. Alvarez</name></author><author><name sortKey="Tran, J H" uniqKey="Tran J">J. H. 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